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  • The number of reads of each sample in single cell RNA-Seq

    Has anybody done single cell RNA-Seq especially Cel-Seq before?
    How many reads per samples would you recommend? I know standard RNA-Seq could better has ~30M per sample and > 3 samples per condition.
    Thank you very much!
    Last edited by super0925; 09-06-2016, 02:17 PM.

  • #2
    CEL-Seq should be able to work out with much fewer reads since it heavily focuses on 3' end.

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