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06-06-2015, 08:07 AM
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#1 |
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Member
Location: Rochester, NY Join Date: Oct 2014
Posts: 11
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What does PHRED stand for?
I know it seems like a silly question to ask, but Google has no answer for me, nor do the papers published by Phil Green and Brent Ewing themselves. The wikipedia article on the matter is very helpful for understanding it, yet provides no explanation for this betwixting acronym.
Could it be PHRED is not an acronym? Thank you, Alex |
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06-06-2015, 09:52 AM
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#2 |
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Senior Member
Location: UK Join Date: Jan 2010
Posts: 338
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Given that Phred is not capitalised, it is unlikely to be an acronym.
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06-06-2015, 02:00 PM
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#3 |
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Senior Member
Location: bethesda Join Date: Feb 2009
Posts: 688
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http://www.acronymfinder.com/Phil%27...8PHRED%29.html
What does PHRED stand for? PHRED stands for Phil's Read Editor (University of Washington Genome Center) https://books.google.com/books?id=Q9...0phred&f=false Last edited by Richard Finney; 06-06-2015 at 02:05 PM. |
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06-08-2015, 04:54 AM
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#4 | |
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Senior Member
Location: Purdue University, West Lafayette, Indiana Join Date: Aug 2008
Posts: 2,218
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Quote:
-- Phillip |
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06-08-2015, 06:41 AM
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#5 |
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Senior Member
Location: bethesda Join Date: Feb 2009
Posts: 688
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I guess human review of problem spots ̶w̶a̶s̶ is important.
Last edited by Richard Finney; 06-08-2015 at 06:44 AM. |
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06-08-2015, 07:01 AM
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#6 | |
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Senior Member
Location: Purdue University, West Lafayette, Indiana Join Date: Aug 2008
Posts: 2,218
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Quote:
"phred" is in no sense an "editor". I'm sure it is just a dopey play on words: past tense of "read" is pronounced "red". Program written by Phil Green. "Ph" + "red" = "Phred". It's like "Fred", but spelled with a "Ph". Ha ha ha. -- Phillip |
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06-08-2015, 07:10 AM
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#7 | ||
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Senior Member
Location: Purdue University, West Lafayette, Indiana Join Date: Aug 2008
Posts: 2,218
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Quote:
http://www.phrap.org/phredphrap/phrap.html Quote:
-- Phillip |
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02-14-2017, 07:33 AM
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#8 |
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Junior Member
Location: Toronto Join Date: Feb 2017
Posts: 1
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Found a pdf....
https://www.illumina.com/documents/p...e_Q-Scores.pdf
This links to an article which explains Phred scoring. |
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| Tags |
| illumina, illumina fastq, phred, phred quality, phred score |
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