Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Difference Values from Clustal Omega

    Hi

    How can I find difference values based on similarity distance matrices produced by clustal omega ?!

    If I have a sample in percentage format like this :

    Code:
    Traes_2BL_B2871DAAB.1_1 100.000000 21.944035 22.133939 23.723042 19.750284 20.431328 20.885358 21.679909 
    Traes_7BL_26A3CC41D.1_2 21.944035 100.000000 22.827688 21.796760 22.974963 20.324006 21.944035 24.889543 
    Traes_5AL_DE0E4DC71.1_3 22.133939 22.827688 100.000000 21.152030 22.474032 17.387033 19.830028 20.963173 
    Traes_2BS_D7A73A455.2_4 23.723042 21.796760 21.152030 100.000000 20.437018 24.361493 19.059107 19.436957 
    OS01T0101800-01_5 19.750284 22.974963 22.474032 20.437018 100.000000 21.414538 20.094259 21.765210 
    OS01T0103000-01_6 20.431328 20.324006 17.387033 24.361493 21.414538 100.000000 20.432220 20.432220 
    OS01T0103050-01_7 20.885358 21.944035 19.830028 19.059107 20.094259 20.432220 100.000000 19.018898 
    OS01T0103600-01_8 21.679909 24.889543 20.963173 19.436957 21.765210 20.432220 19.018898 100.000000
    Can I simply say : Difference = (100-similarity value) ?!

    Thanks in advance

Latest Articles

Collapse

  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:37 PM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, Yesterday, 06:07 PM
0 responses
10 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-22-2024, 10:03 AM
0 responses
51 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-21-2024, 07:32 AM
0 responses
68 views
0 likes
Last Post seqadmin  
Working...
X