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Old 03-30-2015, 06:01 PM   #1
mhkiani
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Default Network analysis

I have RNA-seq data for a plant species (Sorghum) that its genome is already mapped, any suggestion for doing network analysis? I prefer to do it without using R packages.
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Old 04-01-2015, 02:54 AM   #2
reema
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See :- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3493127/
https://www.biostars.org/p/77756/
http://labs.genetics.ucla.edu/horvat...ackages/WGCNA/
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Old 04-26-2015, 12:21 PM   #3
mhkiani
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I have 2 genotypes of Sorghum and got samples from upper and basal parts of stem. I have RNA-seq data for 3 biological data. I'm just wondering that can I do co-expression data analysis or for co-expression data analysis I need to have time-series data or more different conditions?
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