SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Ion Torrent



Similar Threads
Thread Thread Starter Forum Replies Last Post
CLC BIO for detecting indels in ION Torrent PGM data ddaneels Ion Torrent 1 07-30-2012 01:31 PM
Dindel on PGM IonTorrent Data adrian Bioinformatics 1 11-15-2011 06:32 PM
Ion Torrent PGM data with Mosaik-aligner Magnus Bioinformatics 0 05-19-2011 04:59 AM
Analyzing NGS-data for dummies/biologists: suggestions for software? MicroOmicsMan Bioinformatics 6 12-22-2009 08:46 PM

Reply
 
Thread Tools
Old 11-11-2013, 06:40 AM   #1
cybog337
Junior Member
 
Location: RTP

Join Date: Jul 2010
Posts: 8
Default need suggestions for PGM QC data

Hi all,

This is Andrew and need any suggestions against attached seq QC data.

Recently, I got cancer panel service from a company, and I found that seq process was not good.

If the quality of seq data is fine and suitable for finding somatic mutation, I will use this.
But not, I will request re-run of my sample.

My opinion is this data is not good and it is better to do re-run, and any opinion is welcome.

Hope many suggestion and best reagards,


cybog337,



Last edited by cybog337; 11-11-2013 at 04:34 PM.
cybog337 is offline   Reply With Quote
Old 11-17-2013, 05:07 PM   #2
snetmcom
Senior Member
 
Location: USA

Join Date: Oct 2008
Posts: 158
Default

That is not an ideal run, but it looks like you have enough reads for most of the samples. I would only run again if you need more coverage.
snetmcom is offline   Reply With Quote
Reply

Tags
pgm qc

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:58 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO