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  • #1

    BWA_MEM on PacBio Reads

    Hello, can anybody explain me please how does the BWA-mem -x pacbio (Release 0.7.10, default settings ) algorithm work?

    I found this interesting blog http://www.homolog.us/blogs/blog/201...-benchmarking/ but it is still not clear to me.

    Can you also suggest me how to unambiguously distinguish mapped/unmapped and multimapping reads?

    Thank you very much!!

    Aurora
    Tags: bwa_mem
  • #2
    Please don't crosspost on here and biostars.

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