Hello, can anybody explain me please how does the BWA-mem -x pacbio (Release 0.7.10, default settings ) algorithm work?
I found this interesting blog http://www.homolog.us/blogs/blog/201...-benchmarking/ but it is still not clear to me.
Can you also suggest me how to unambiguously distinguish mapped/unmapped and multimapping reads?
Thank you very much!!
Aurora
I found this interesting blog http://www.homolog.us/blogs/blog/201...-benchmarking/ but it is still not clear to me.
Can you also suggest me how to unambiguously distinguish mapped/unmapped and multimapping reads?
Thank you very much!!
Aurora
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