Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
TCGA sample type Zhan yueping Bioinformatics 2 03-30-2015 05:41 PM
BRCA grade papori Bioinformatics 0 07-23-2014 07:40 AM
Myriad and BRCA math_guy Bioinformatics 17 07-25-2013 09:13 AM
Does tophat use the library-type information for mapping, or just for the XS flag? carmeyeii Bioinformatics 1 05-16-2013 12:18 PM
Ancestry haplogroup type information DB? dan Personalized Genomics 2 06-20-2011 11:45 AM

Thread Tools
Old 02-11-2016, 12:50 AM   #1
Senior Member
Location: berd

Join Date: Dec 2010
Posts: 181
Default BRCA sub type information in TCGA

I am looking for the Breast Cancer molecular subtype information in TCGA.
I searched in the clinical data files, but i havnt found it there.
What I found is "stageing" and the "pharmaceutical_therapy_drug_name" per "patient".

Is there a file that contain the molecular subtype information?
(Luminal A,Luminal B,Triple negative/basal-like,HER2 type)

papori is offline   Reply With Quote
Old 02-11-2016, 06:59 AM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,087

817 of them are in the supplement of a recent Cell paper. (Supplemental Table 1)
This is for the RNAseq data.

@Pap: If you need the calls for the full RNAseq subset then send me a PM.
GenoMax is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:52 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO