Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
Bioinformatics pipeline for Illumina MiSeq paired end data malandkib Bioinformatics 4 11-16-2016 07:28 AM
Hi, I'm Elodie and trying to analyse Illumina MiSeq data on Obitools ElodieModave Introductions 0 10-10-2016 04:35 PM
Workstation configuration for analysing Illumina MiSeq data using QIIME Sama Kalyana Chakravarthy Bioinformatics 2 09-18-2016 11:50 PM
Analysis of MiSeq Illumina data, how calculate the PF reads?? mruizm Illumina/Solexa 4 05-02-2013 09:54 AM
PubMed: Statistical Analyses of Next Generation Sequence Data: A Partial Overview. Newsbot! Literature Watch 0 11-30-2010 09:20 AM

Thread Tools
Old 07-05-2018, 01:26 PM   #1
Junior Member
Location: guadeloupe

Join Date: Jul 2018
Posts: 1
Lightbulb Statistical Analyses of illumina Miseq 250PE Data

Hello everyone !
I am a french PhD student in biology.

I am working on the impact of physicochemicals parameters on the composition of bacterial communities in natural breeding sites of mosquitoes larvae.
I collected 100 samples of breeding sites water, I measured their parameters( pH, salinity...) and by illumina Miseq sequençing i determined the bacterial communities composition of my 100 samples .
With these sequencing data I made an unifrac unweighted analysis and it clearly appears 2 clusters in PcoA.
I am new in the field of metagenomics.
I don't know which multivariate statistical tests to use (RDA, CCA, PERMANOVA?) in order to determine which physicochemicals variables explains the 2 clusters.
I thank you in advance for your reply.
best regards
hery is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:26 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO