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Old 05-28-2009, 06:06 AM   #1
Layla
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Location: London

Join Date: Sep 2008
Posts: 58
Default maq merge

Hi all,

Just mapped a solexa paired end dataset using ./match to create an out.map file. Followed this with carrying out a second paired end solexa chip-seq. Unfortunately the base quality on the 3' end was terrible so only mapped the 5' end using ./maq match (single end).

Can maq merge command be used for 1 paired end map file and 1 single ended map file?

Cheers
L
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