Hey all--
I'm trying to figure out if edgeR is an appropriate tool for differential gene expression analysis of a time course dataset. I have six samples corresponding to times in development from fertilization to larva (unequally spaced in time), with two biological replicates per time point.
If anyone has any suggestion, either on the use of edgeR vs something else, or how best to approach this with edgeR, that would be much appreciated.
Cheers
I'm trying to figure out if edgeR is an appropriate tool for differential gene expression analysis of a time course dataset. I have six samples corresponding to times in development from fertilization to larva (unequally spaced in time), with two biological replicates per time point.
If anyone has any suggestion, either on the use of edgeR vs something else, or how best to approach this with edgeR, that would be much appreciated.
Cheers
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