Hi all,
I am currently trying to use MapSplice and compare it with Tophat and SpliceMap. My reads are 60bp long single end in fasta format. When I try to run it I get the following:
bin directory: [/opt/MapSplice_1.15.1/bin/]
[Wed Mar 30 13:47:11 2011] Checking for chromosomes files or directory
[Wed Mar 30 13:47:11 2011] Checking for chromosomes files or directory passed
[Wed Mar 30 13:47:11 2011] Checking for Bowtie index files
[Wed Mar 30 13:47:11 2011] check reads format
[Wed Mar 30 13:47:11 2011] merge paired end reads remove short
[Wed Mar 30 13:47:12 2011] Mapping reads against P.patens_index with Bowtie
[Wed Mar 30 13:47:18 2011] Converting bowtie mapped to SAM format
[Wed Mar 30 13:47:18 2011] divide reads
[Wed Mar 30 13:47:19 2011] Mapping reads against P.patens_index with Bowtie
[Wed Mar 30 13:47:23 2011] reads all chromo sizes
[Wed Mar 30 13:47:24 2011] mapsplice_search
error: open reads file error
[FAILED]
Error: fmapsplice_search failed
Does anyone have any idea of what the problem might be???
Thank you very much
I am currently trying to use MapSplice and compare it with Tophat and SpliceMap. My reads are 60bp long single end in fasta format. When I try to run it I get the following:
bin directory: [/opt/MapSplice_1.15.1/bin/]
[Wed Mar 30 13:47:11 2011] Checking for chromosomes files or directory
[Wed Mar 30 13:47:11 2011] Checking for chromosomes files or directory passed
[Wed Mar 30 13:47:11 2011] Checking for Bowtie index files
[Wed Mar 30 13:47:11 2011] check reads format
[Wed Mar 30 13:47:11 2011] merge paired end reads remove short
[Wed Mar 30 13:47:12 2011] Mapping reads against P.patens_index with Bowtie
[Wed Mar 30 13:47:18 2011] Converting bowtie mapped to SAM format
[Wed Mar 30 13:47:18 2011] divide reads
[Wed Mar 30 13:47:19 2011] Mapping reads against P.patens_index with Bowtie
[Wed Mar 30 13:47:23 2011] reads all chromo sizes
[Wed Mar 30 13:47:24 2011] mapsplice_search
error: open reads file error
[FAILED]
Error: fmapsplice_search failed
Does anyone have any idea of what the problem might be???
Thank you very much
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