Hello
I am using STAR2.3.0e for alignments.
Are the output sam files (Aligned.out..sam) already sorted and can be used directly with htseq-count?
Or do I need to convert them into bam, sort the bam, and use the sorted bam for htseq-count?
Any help is appreciated.
Thanks.
M
I am using STAR2.3.0e for alignments.
Are the output sam files (Aligned.out..sam) already sorted and can be used directly with htseq-count?
Or do I need to convert them into bam, sort the bam, and use the sorted bam for htseq-count?
Any help is appreciated.
Thanks.
M
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