Hi everyone,
I would like to know how is the default reference genome used in TMAP aligner.
I thought it was Human Genome - Feb. 2009 (hg19, GRCh37) that is in Ion Community documentation, but they don't match with my data.
The bam file used contigs 1, .., X, Y, MT, and GL###, but the reference used chr1,crh2, …, chrX, chrY, chrM. They do not appear to be the same.
Thank you!
I would like to know how is the default reference genome used in TMAP aligner.
I thought it was Human Genome - Feb. 2009 (hg19, GRCh37) that is in Ion Community documentation, but they don't match with my data.
The bam file used contigs 1, .., X, Y, MT, and GL###, but the reference used chr1,crh2, …, chrX, chrY, chrM. They do not appear to be the same.
Thank you!
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