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Old 07-25-2012, 12:11 AM   #1
m_elena_bioinfo
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Location: Ospedali Riuniti di Bergamo, ITALY

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Default CASAVA library problem

Dear,
the installation of CASAVA1.8 with cmake is not trivial for me!
I download the tar file, and tried to install all by cmake. But I have a problem in define library @CASAVA_FULL_PERL_LIBDIR@ and @CASAVA_FULL_DATADIR@ in perl scripts. In the scripts, it say "# substituted by CMake during install"...but when I run configureBcltoFastq.pl it returns me some errors like:

@CASAVA_FULL_DATADIR@/makefiles/ not found...

Any advice?
Thanx a lot
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Old 07-25-2012, 05:35 AM   #2
seb567
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Location: Québec, Canada

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Default

Quote:
Originally Posted by m_elena_bioinfo View Post
Dear,
the installation of CASAVA1.8 with cmake is not trivial for me!
I download the tar file, and tried to install all by cmake. But I have a problem in define library @CASAVA_FULL_PERL_LIBDIR@ and @CASAVA_FULL_DATADIR@ in perl scripts. In the scripts, it say "# substituted by CMake during install"...but when I run configureBcltoFastq.pl it returns me some errors like:

@CASAVA_FULL_DATADIR@/makefiles/ not found...

Any advice?
Thanx a lot
Based on CASAVA_v1.8.2/src/INSTALL:


$ tar -jxf CASAVA_v1.8.2.tar.bz2
$ mkdir CASAVA_v1.8.2-build
$ cd CASAVA_v1.8.2-build
$ ../CASAVA_v1.8.2/configure --prefix=/software/CASAVA/1.8.2
$ make
$ make install


This will install it to /software/CASAVA/1.8.2


I think you are not supposed to use CMake yourself to build CASAVA, it is probably something internal to its build system.


Good luck.
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