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Old 11-07-2013, 06:12 PM   #1
Pengfei Liu
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Location: Beijing

Join Date: Nov 2012
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Default How to get the Gene names to GO terms for bacteria and archaea

Hi,
I want to use goseq to do GO enrichment of RNAseq data of a bacteria and archaea. But I was stucked by the gene to GO term list.
I have try the biomart method here(http://seqanswers.com/forums/showthread.php?t=21829) in R,
but unfortunately, biomart now seems not support bacteria now. so how could I fetch a list of gene to GO terms?

Thanks in advance!

Pengfei
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