BWA in the align mode (generating the indices of reads on chromosomes) has multiple threads as an option but doesn't seem to have this for generating the actual alignments
Is it generally I/O-bound (waiting on disk) when doing the SAM generation? Or is this just something on the to-do list?
Is it generally I/O-bound (waiting on disk) when doing the SAM generation? Or is this just something on the to-do list?
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