Hello everybody,
I would like to know if there is a description of a SOAP pipeline out there anywhere.
I have 2 paired end fastq files. I want to align these to the hg19 genome, and find SNPs. Does anyone know how to do this in SOAP?
At this website: http://soap.genomics.org.cn/soapsnp.html
they have a number of tools. It's just that it's not all clear to me which one to use, and in which order.
Thanks, csmatyi
I would like to know if there is a description of a SOAP pipeline out there anywhere.
I have 2 paired end fastq files. I want to align these to the hg19 genome, and find SNPs. Does anyone know how to do this in SOAP?
At this website: http://soap.genomics.org.cn/soapsnp.html
they have a number of tools. It's just that it's not all clear to me which one to use, and in which order.
Thanks, csmatyi