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  • #1

    What are the best tools/practices for CNV detection/analysis?

    I am looking for the current state-of-the-art tools/practices for CNV (structural variation) detection/analysis for family (trio) data produced by Illumina.

    I will have data obtained on Illumina SNP arrays as well as from Illumina whole exome sequencing and whole-genome sequencing.
    What would be the best tools to apply for each technology?

    Any advice/suggestion is highly appreciated

    Thank you!
    Tags: cnv calling, snp arrays, structural variation, whole exome sequencing, whole genome sequencing
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