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07-29-2010, 01:02 PM
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Member
Location: San Mateo, CA Join Date: Feb 2010
Posts: 17
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IMAGE input files
Hi,
We are using IMAGE to fill in gaps of our genome assembly but are not sure how to generate the required input files: contigs.fa.original and read.placed.original (http://sourceforge.net/apps/mediawik...w_to_run_IMAGE) Our initial assembly is done with BWA. Does anyone have a script that can use a BAM file (the BWA output) to generate contigs.fa.original and read.placed.original? Thanks! Sarah Kingan |
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| Tags |
| bam, bwa, image |
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