Hi,
Just want to be sure about the MAQ mapping qualities.
I have a lot of reads with the mapping quality of 99. Is this the Phred-scaled probability that the read alignment is wrong? And if so, the reads with mapping quality of 99 will have a probability of being wrong equal to p = 10 ^(-90/10) = 1e-09 right?
Just want to be sure about the MAQ mapping qualities.
I have a lot of reads with the mapping quality of 99. Is this the Phred-scaled probability that the read alignment is wrong? And if so, the reads with mapping quality of 99 will have a probability of being wrong equal to p = 10 ^(-90/10) = 1e-09 right?
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