SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Volcano plot with R DCseq Bioinformatics 5 07-14-2017 12:44 AM
Dark plot ??? Marcos Lancia Bioinformatics 9 10-20-2015 10:39 AM
SOLiD QV plot av_d SOLiD 5 07-19-2012 11:22 PM
LD decay plot xujie Bioinformatics 0 06-24-2012 07:26 AM
Anyone seen an intensity plot like this? sequencer_lee Illumina/Solexa 7 07-11-2008 11:57 AM

Reply
 
Thread Tools
Old 08-10-2017, 04:41 AM   #1
DCseq
Junior Member
 
Location: Germany

Join Date: Jul 2017
Posts: 5
Default MA plot

Hi there!
I would like to make the following plot from NGS data.
https://www.google.de/search?q=MA+pl...pwuownopgXq0M:


What is depicted on the x-axis?
Say I have the fold change of condition1 vs condition2. The "mean expression" would than be the mean of normalized expression counts from one condition or the other, or the mean of all sample counts used for calculating the fold change?

Many thanks for your responses in advance.

Best wishes
DCseq is offline   Reply With Quote
Old 08-11-2017, 01:53 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,470
Default

Usually it's the mean of all samples.
dpryan is offline   Reply With Quote
Reply

Tags
ma plot, mean expression count, ngs

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:52 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO