Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Analysis transcriptome 454 + sanger eavila Bioinformatics 2 08-27-2012 09:59 AM
The best genome de novo assembly software using hybrid data (Illumina, 454 & Sanger)? Godevil De novo discovery 36 08-01-2012 02:25 AM
Difference and similarity between Sanger,Illumina/Solexa and 454 sequencing data... edge Bioinformatics 0 09-07-2009 08:47 PM

Thread Tools
Old 08-08-2017, 12:44 AM   #1
Junior Member
Location: Russia

Join Date: Feb 2017
Posts: 1
Question UniFrac analysis for Sanger and 454 pyroseq data

Hi, all!
I have a dataset from Sanger (12 seqs ~350-500bp) and 454 sequencing (32000 seqs (140 OTUs) ~500bp).

And here is a question:
It's possible to compare OTUs seqs from 454 with Sanger by weighted\unweighted UniFrac analysis?

And one more question: It's correctly to do this if I have so different size of datasets - 12 seqs vs. 140 OTUs? Could I say that my 12 Sanger seqs are equivalent to OTUs in metagenome?

Kind regards!
odyssey is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 11:25 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO