MaSuRCA

[email protected] · 04-27-2017, 07:43 PM

Hi
I was working on RNA sequence analysis of paired end sequence reads with Tuxedo pipeline. It required an additional installation of MaSuRCA genome assembler for assembling super reads. I downloaded the latest version, MaSuRCA-3.2.2_RC1 , and gave the following command in the MaSuRCA-3.2.2_RC1 directory for its installation.

# sudo ./install.sh

Since its a long output i have pasted it in paste bin and here is the corresponding pastebin link:

https://pastebin.com/XLAT4itm

Due to the errors in between sr_config_example.txt file was not generated in MaSuRCA directory, and I couldn’t successfully run the perl command for assembling super reads. What could possibily be wrong here? Thanks in advance.

[email protected]

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
MaSuRCA adapter trimming	yvan.wenger	De novo discovery	1	07-07-2016 07:45 AM
MaSuRCA error	bsp017	Illumina/Solexa	18	05-15-2016 10:23 PM
MaSuRCA-Quorum	Camael	Bioinformatics	0	03-07-2015 07:27 PM
What reads were assembled by MaSuRCA?	seqEQlkw	Bioinformatics	0	10-23-2014 06:17 PM
MaSuRCA install error	Volklor	Bioinformatics	6	01-22-2014 06:10 AM

04-27-2017, 07:43 PM	#1
[email protected] Junior Member Location: India Join Date: Apr 2017 Posts: 3	MaSuRCA Hi I was working on RNA sequence analysis of paired end sequence reads with Tuxedo pipeline. It required an additional installation of MaSuRCA genome assembler for assembling super reads. I downloaded the latest version, MaSuRCA-3.2.2_RC1 , and gave the following command in the MaSuRCA-3.2.2_RC1 directory for its installation. # sudo ./install.sh Since its a long output i have pasted it in paste bin and here is the corresponding pastebin link: https://pastebin.com/XLAT4itm Due to the errors in between sr_config_example.txt file was not generated in MaSuRCA directory, and I couldn’t successfully run the perl command for assembling super reads. What could possibily be wrong here? Thanks in advance. [email protected]