SEQanswers

Go Back   SEQanswers > Introductions



Similar Threads
Thread Thread Starter Forum Replies Last Post
Oxford Nanopore to introduce "disruptive technology" at AGBT GW_OK The Pipeline 103 11-06-2012 10:01 AM
Can GAIIx introduce a bias in coverage A on T? vjimenez Illumina/Solexa 3 05-18-2011 04:11 AM
can some one introduce me to next generation sequencing?? chanderbio General 4 08-26-2009 06:36 AM

Closed Thread
 
Thread Tools
Old 06-04-2009, 04:20 AM   #21
vani s kulkarni
Member
 
Location: Netherlands

Join Date: Jun 2009
Posts: 11
Default

hello everyone,
I am vani from Netherlands. I've just started working with solexa short read sequence for identification of SNPs and I will do further data analysis.....And glad to meet you all here. I hope help others and get help.

Best wishes!
vani s kulkarni is offline  
Old 06-04-2009, 06:25 AM   #22
lry198010
Member
 
Location: Wuhan China

Join Date: Aug 2008
Posts: 13
Default

Hi every body, I'm a Ph.D student from China and majoy in Bioinformatics new, I was very interested in Comparative genomics, and take Brassica species as my study model.
lry198010 is offline  
Old 06-07-2009, 03:31 AM   #23
mathilde
Junior Member
 
Location: South Africa

Join Date: May 2009
Posts: 1
Smile Differential expression

Hi all,

I am from South Africa, working on differential gene expression in abalone. We sequenced with Illumina an I am trying some of the analyses in CLC genomics at the moment. Anyone else with comments on the statisical analysis tools in CLC, please share, as well as any relevant literature.

Thanks,

Mathilde
mathilde is offline  
Old 06-10-2009, 04:15 PM   #24
TimSawbridge
Junior Member
 
Location: Melbourne Australia

Join Date: Jun 2009
Posts: 1
Default G'day

Hello All,
I am working in Melbourne. we have been using 454 GS20 FLX and now Titanium for WGS of bacteria and fungi, and for metagenomics. We are about to do some Illumina work.
TimSawbridge is offline  
Old 06-11-2009, 08:51 AM   #25
ebhobbs
Junior Member
 
Location: Seattle, WA

Join Date: May 2009
Posts: 3
Default

Hi all,
I work at Geospiza on their Genesifter Lab Edition (formally Finch Lab) LIMS software for both Sanger and NextGen labs, and recently I've been getting more into the analysis side of things. As a developer I don't get to go out to the labs and see how people are actually using the software, so it's nice to hear what people are doing and what problems they've run into. I look forward to talking with you all.

Cheers,
Eric Hobbs
ebhobbs is offline  
Old 06-23-2009, 09:00 AM   #26
PUGenomeLab
Junior Member
 
Location: West Lafayette, IN

Join Date: Jun 2009
Posts: 2
Default Introduction

Hello,
I'm a researcher working in West Lafayette, IN. We are using the Illumina/Solexa platform to perform comparative mammalian genomics. Our lab is a molecular bio lab as well as a bioinformatics lab.
PUGenomeLab is offline  
Old 06-24-2009, 12:27 AM   #27
barbera
Junior Member
 
Location: Amsterdam

Join Date: Oct 2008
Posts: 1
Default

Hi,

I work at the Academic Medical Center in Amsterdam, the Netherlands. I work for the Bioinformatics group and started working with nextgen sequencing end 2007 (454). I work together with the central sequencing facility and different labs of the AMC. The sequencing facility has a Roche and a Solid machine. The first Solid data will come soon. A wide range of experiments have run on the Roche machine. SNP analysis, meta genomics, variant detection+expression and whole genome sequencing for instance. I work together with researchers from several labs to address the questions that can not be solved with current software packages. Happy to meet you here.

Cheers,
Barbera
barbera is offline  
Old 06-30-2009, 07:30 PM   #28
krobison
Senior Member
 
Location: Boston area

Join Date: Nov 2007
Posts: 747
Default

Hello! I'm specifically interested in cancer genomics (I work at a oncology drug developer) -- & sometimes ponder next-gen topics on my blog, Omics! Omics! since I find pretty much all of it fascinating.
krobison is offline  
Old 07-01-2009, 05:43 AM   #29
rranauro
Junior Member
 
Location: boston

Join Date: Jun 2009
Posts: 2
Default

Based near Boston I lead an interdisciplinary team of computational biologists, computer scientists and web developers creating a scalable platform for managing and mining sequence data.

I am a trained computer scientist and have spent 25 years in commercial software businesses, the last 10 years dedicated to the life science domain.
rranauro is offline  
Old 07-01-2009, 06:02 PM   #30
apepper
Junior Member
 
Location: College Station, Texas, USA

Join Date: Jul 2009
Posts: 1
Default

Howdy from Texas A&M University!

My name is Alan and I am a faculty member/biologist. We have a couple GAIIs and working on a 454. I have learned a great deal already from this forum!
apepper is offline  
Old 07-02-2009, 03:55 PM   #31
jiangli
Junior Member
 
Location: san francisco

Join Date: Jul 2009
Posts: 2
Default

Hello everybody !
i am a scientist working at UC san francisco. My projects involve solexa sequencing of genes on mental development disorders. i am glad to join the community and hope to help each other.
jiangli is offline  
Old 07-04-2009, 04:02 PM   #32
andrea_maso
Junior Member
 
Location: Rome - ITALY

Join Date: Jul 2009
Posts: 3
Default

Hi, I am Andrea and I work in Rome (Italy) in the Microarrays Laboratory of Children's Hospital Bambino Gesł. We are involved in several mRNA and microRNA profiling experiments and we are beginning to analyze the first NGS data with open-source software/tools.
Data are coming from service providers, but we are planning in a near future to buy also the analyzer.

We are beginners but we learn rapidly!! ...with your help of course.
Kind regards.
andrea_maso is offline  
Old 07-08-2009, 05:11 AM   #33
canis
Junior Member
 
Location: bangalore

Join Date: Sep 2008
Posts: 3
Default Hi there

Greetings, this is Veer from India, I am working on Variation, miRNa and ChIP-Seq analysis using mostly Solexa short reads. Looking forward to some interesting discussions on NGS
canis is offline  
Old 07-12-2009, 11:47 PM   #34
xgm-1999
Junior Member
 
Location: china

Join Date: Jul 2009
Posts: 6
Default

hello everyone,
I am GM from China. I've just started working with Roche 454 shortgun sequence for identification of SNPs. I hope help others and get help.

Cheers,
GM
xgm-1999 is offline  
Old 07-19-2009, 09:23 PM   #35
atul
Junior Member
 
Location: india

Join Date: Jul 2009
Posts: 2
Default

hi all.

am atul from india working working as a Bioinformatics analyst in OcimumBiosolutions,
am looking for NGS data analysis basically de novo seq. assembly .

regards.
Atul
atul is offline  
Old 08-23-2009, 04:30 PM   #36
epistatic
Senior Member
 
Location: Dronning Maud Land

Join Date: Mar 2009
Posts: 129
Default

Greetings,

I did a post doc working on microarray development for recently sequenced non-model species and selective coding sequence capture methods for microarray hybridization and next-gen transcriptome sequencing. Then I worked in a couple of CT biotech companies on a selective sequence capture/exon enrichment method and on a new semiconductor based next-gen DNA sequencing method.

Cheers!

TAC

Last edited by epistatic; 09-01-2010 at 07:06 AM.
epistatic is offline  
Old 08-30-2009, 11:02 PM   #37
HiroMishima
Member
 
Location: Nagasaki, Japan

Join Date: Aug 2009
Posts: 12
Smile Introduction from Japan

Hi all,

I am Hiro Mishima, and a research fellow at Department of Human Genetics, Nagasaki University, Nagasaki, Japan. I am working on a project of resequencing/sequence-capturing of human genome using Illumina/SOLEXA and Roche/454 systems. I am also working on scripting in the Ruby language for data processing.

I am happy if I can give and find ideas and hints about next-gen sequencing technologies.

Thanks,
Hiro
HiroMishima is offline  
Old 09-04-2009, 06:32 PM   #38
chen
Member
 
Location: GZ

Join Date: Sep 2009
Posts: 12
Default

Hi,
I'm chen, from shenzhen,China. Now I am mostly working the experimental part of the solexa libraries. I am glad to join the community and hope we can help each other.

Besh wishes!
chen
chen is offline  
Old 09-10-2009, 11:17 PM   #39
Arjen
Junior Member
 
Location: Nijmegen, the Netherlands

Join Date: Sep 2009
Posts: 1
Default

Hi, I am Arjen, working in Nijmegen (the Netherlands). Primary interest is to find ways to introduce NGS in diagnostics, especially oncogenetics. We have a SOLiD and a 454.
Arjen is offline  
Old 09-13-2009, 08:14 AM   #40
dmead
Junior Member
 
Location: wisconsin

Join Date: Sep 2009
Posts: 1
Default Hello SEQers

Hi, I work at Lucigen developing library construction technologies for sequencing (Appl. Environ. Microbiol. 74:4164-4174 [2008]). Will be attending the Next Gen Seq meeting in RI next week if anyone wants to meet.
Cheers,
David Mead
dmead is offline  
Closed Thread

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:48 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO