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Old 07-21-2013, 07:01 AM   #1
wacguy
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Default Arabidopsis gtf file with tss and p ids

Hi all,

I'm looking for Arabidopsis gtf file with the tss_is and p_id attributes. all the links I've tried so far seems to lack these fields. I know it is possible to create it with cuffcompare but I rather download it. I've tried Enseble and TAIR and illumina. Does anyone have a link for such file.

Thanks a lot,
Guy
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Old 07-21-2013, 07:49 AM   #2
GenoMax
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GTF files (both NCBI and Ensembl, TAIR9 and 10) from the iGenomes site have the tss_id and p_id fields.

http://cufflinks.cbcb.umd.edu/igenomes.html

Last edited by GenoMax; 07-21-2013 at 07:51 AM.
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Old 07-21-2013, 07:08 PM   #3
wacguy
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Thanks a lot!!
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