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Old 09-29-2014, 07:35 PM   #1
Azedenkae
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Location: Sydney

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Default Kmer Result of FastQC Report

Hey guys, so a question regarding the kmer section of the FastQC report.

I notice that mine is 'Relative enrichment over read length', whereas when my colleague tried the exact same analysis on the exact same file, he gets 'log2 obs/exp'.

Our graphs of course look very different as well.

We both have the same version though - 0.10.1.

Anyone have any idea as to why this is the case, and what can be done to select the preferred analysis? Both are using default settings... so yeah, rather weird. ><
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Old 09-29-2014, 10:13 PM   #2
WhatsOEver
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Quote:
Originally Posted by Azedenkae View Post
We both have the same version though - 0.10.1.
Are you sure about that?
I just checked it and all my fastqc reports generated with 0.10.1 read 'Relative enrichment over read length' whereas all reports generated with 0.11.1 or 0.11.2 read 'log2 obs/exp'.
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