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Old 05-24-2015, 01:46 AM   #1
Location: paris

Join Date: Oct 2009
Posts: 86
Default DEXSeq: How to get expresion value for each exon?

In my analysis, I do not want to compare exon based two conditions. I just want to get the expression value for each exon in each sample. How can I do it using DEXSeq?

dxd <- DEXSeqDataSetFromHTSeq(list.files("raw_counts/", full.names=T),
sampleData = sampleTable,
design = ~ 1, # Here is fine?
flattenedfile = "../scrips/genome.gff")

dxd <- estimateSizeFactors(dxd)
dxd <- estimateDispersions(dxd)

What is the next step?
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