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Old 02-03-2015, 07:37 PM   #1
Location: Canada

Join Date: Jan 2012
Posts: 11
Default Discriminant Analysis for RNAseq data

Dear all,

I am wondering if there is a good R package developed that can perform discriminant analysis for RNAseq data?

guanzhidao is offline   Reply With Quote
Old 10-04-2015, 08:48 AM   #2
Location: North Carolina

Join Date: Jan 2010
Posts: 82
Default Discriminant Function RNAseq

Following up on this post, has anyone done something like this?

I'm envisioning taking transformed data from say DE-Seq2, and conducting discriminant analysis.

Anyone have experience coding this? Is there a way to use the SummarizedExperiment class from DE-Seq?

I'd like to use one of the variables in my DESeq analysis in discriminant analysis to compare groups.

chrisbala is offline   Reply With Quote

clustering, discriminant analysis, rnaseq

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