SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Picard-Tools ValidateSamFile Error Question JezSupreme Bioinformatics 5 01-15-2016 12:41 AM
Picard gwilymh General 6 12-12-2014 11:42 AM
Picard bair Bioinformatics 2 07-15-2014 04:45 AM
Beginner question about Picard AddOrReplaceReadGroups yeppomonkey Bioinformatics 1 09-03-2012 10:59 PM
Question about MarkDuplicates.jar in Picard tool eilosei Bioinformatics 2 06-01-2012 05:49 AM

Reply
 
Thread Tools
Old 03-06-2017, 11:17 AM   #1
gujh
Junior Member
 
Location: VA

Join Date: Oct 2012
Posts: 1
Default Question regarding picard collectrnaseqmatrics

Hi guys,

I am using picard collectrnaserqmetics and I am confused about some fundamental concept here:
picard will report the number of bases mapped to different genomic features including coding region, UTR, intron, intergenic region, and ribosome.
If I have reads mapped to a non-coding RNA, e.g., lincRNA, will the reads be attributed to which part of genomic feature?

Thank you.
gujh is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:15 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO