SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
PAGIT input files sivasubramani Bioinformatics 1 07-29-2013 03:34 PM
Blast2go input files Bioinformaticsnewb Bioinformatics 4 02-25-2013 04:27 PM
where is the error in my input files? shuang Bioinformatics 3 08-23-2011 01:23 AM
input files for IMAGE Maegwin Bioinformatics 4 04-22-2011 04:54 PM
BWA - input files Bruins Bioinformatics 2 07-06-2010 11:43 PM

Reply
 
Thread Tools
Old 09-12-2014, 01:48 AM   #1
thek71
Junior Member
 
Location: Freiburg

Join Date: Mar 2011
Posts: 4
Default OncodriveFM input files

Dear all,

I was thinking of using OncodriveFM for identification of driver genes, but I was unable to create the input files needed. In the example files the CLL.tdm file has the SIFT, PolyPhen2 and MA values per gene per sample, but when using the VEP program fro the calculation of the first two, they are reported per position. Same when using the MA.
Has anyone any experience with OncodriveFM, or any ideas on how to create the input file?

Thank you in advance.
thek71 is offline   Reply With Quote
Old 05-22-2017, 06:56 AM   #2
shum1
Member
 
Location: Sweden

Join Date: Apr 2010
Posts: 11
Default

Hi thek71,

I wonder if you were able to get the answer to this? Were you able to run oncodrivefm on your data? I am trying to run this software on my tumor data, and find problem in running.
shum1 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:14 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO