XT:U => Unique alignment
XT:R => Repeat
XT:N => Not mapped
XT:M => Mate-sw
so what the hell is this "Mate-sw" type alignment?
PS:
#define BWA_TYPE_NO_MATCH 0
#define BWA_TYPE_UNIQUE 1
#define BWA_TYPE_REPEAT 2
#define BWA_TYPE_MATESW 3
XT:R => Repeat
XT:N => Not mapped
XT:M => Mate-sw
so what the hell is this "Mate-sw" type alignment?
PS:
#define BWA_TYPE_NO_MATCH 0
#define BWA_TYPE_UNIQUE 1
#define BWA_TYPE_REPEAT 2
#define BWA_TYPE_MATESW 3
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