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  • Database containing links between PubMed-Publications and Gene Names

    Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and best regards.

  • #2
    Example: Get all publications for Cdc45 (ENSMUSG00000000028)

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    • #3
      You can check Entrezdirect from NCBI. Use it to do pubmed database searches like this.

      Code:
       esearch -db pubmed -query "CDC45 [GENE]" | efetch -format abstract

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      • #4
        Is it also possible to do the query as HTTP request?
        Many Thanks.

        Comment


        • #5
          Yes it should be possible. Take a look at this page.

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