Hi,
most of the time, people compare results, using the same dataset, but obtained from different tools (example: velvet vs. soapdenovo)
I have however two independent datasets (solexa data, obtained from two different 'extraction' methods), on which I performed seperately a de novo assembly. So I have two assemblies, coming from different data, but coming from the same species. Now I would like to compare both assemblies and see which assembly is the most satisfying to me. I have questions like: is there overlap? Is one completely imbedded in the other? Are they complementary? etc.
So simple: how to compare two independent de novo assemblies (same species)?
Thanks
most of the time, people compare results, using the same dataset, but obtained from different tools (example: velvet vs. soapdenovo)
I have however two independent datasets (solexa data, obtained from two different 'extraction' methods), on which I performed seperately a de novo assembly. So I have two assemblies, coming from different data, but coming from the same species. Now I would like to compare both assemblies and see which assembly is the most satisfying to me. I have questions like: is there overlap? Is one completely imbedded in the other? Are they complementary? etc.
So simple: how to compare two independent de novo assemblies (same species)?
Thanks
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