I'm interested in genomic locations of both precursor and mature microRNAs.
I'm familiar with mirBase which contains the sequences of both types that can be downloaded as fasta files, but I'm interested in more of a .bed type of file with genomic locations.
The available .gff's contain that information for microRNA precursors, but I can't find it for the mature mirs. When looking at a specific mir in the database the offset of the mature mir relative to the precursor sequence is provided so the information is there. I'm looking for a way to download it in bulk and not one by one.
Does anyone have any idea how to do this, or alternatively a reference to another database with easier access to this information.
I've already looked at UCSC - only precursors and fRNAdb - only sequences.
Appreciate the help!
I'm familiar with mirBase which contains the sequences of both types that can be downloaded as fasta files, but I'm interested in more of a .bed type of file with genomic locations.
The available .gff's contain that information for microRNA precursors, but I can't find it for the mature mirs. When looking at a specific mir in the database the offset of the mature mir relative to the precursor sequence is provided so the information is there. I'm looking for a way to download it in bulk and not one by one.
Does anyone have any idea how to do this, or alternatively a reference to another database with easier access to this information.
I've already looked at UCSC - only precursors and fRNAdb - only sequences.
Appreciate the help!
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