Failed to View .BAM file in Artemis

[rururara]

I always get this error when I view .BAM file in Artemis. I create the index file in the same folder. The error message I got : .bam.bai is older than .bam file .
I dont have any idea about this. Anyone experience with this?

Thanks!

[nivea]

I always get this error when I view .BAM file in Artemis. I create the index file in the same folder. The error message I got : .bam.bai is older than .bam file .
I dont have any idea about this. Anyone experience with this?

Thanks!

Hi, I came across the same problem... have you got the solution? Is it because the Java version is old?

[rururara]

Hai nivea.
Yup. I already solved the problem. I dont think it's because of Java version.
It's depends on our BAM file. I tried to optimize back my alignment. Then I took out the uniquely mapping reads from the alignment. After that I formatted the BAM file properly. Make sure you have sorted your bam file and index your bam file. In one folder, should have these three files : .bam, sorted.bam, sorted.bam.bai.

Good luck!

[nivea]

Hi rururara,

Thanks for reply. I solved the problem too, just named the index file in a wrong way