Good morning,
I just installed Tophat2 Bowtie2 and Samtools on my Mac. I am trying to run the test file and I get this error.
[2013-05-15 17:35:27] Beginning TopHat run (v2.0.8b)
-----------------------------------------------
[2013-05-15 17:35:27] Checking for Bowtie
Bowtie version: 2.1.0.0
[2013-05-15 17:35:27] Checking for Samtools
Samtools version: 0.1.19.0
[2013-05-15 17:35:27] Checking for Bowtie index files
[2013-05-15 17:35:27] Checking for reference FASTA file
[2013-05-15 17:35:27] Generating SAM header for test_ref
format: fastq
quality scale: phred33 (default)
[2013-05-15 17:35:27] Preparing reads
[FAILED]
[Errno 8] Exec format error
I tried to figure out the origin of the error but I am stuck.
I will appreciate if I can get some help.
Thanks
I just installed Tophat2 Bowtie2 and Samtools on my Mac. I am trying to run the test file and I get this error.
[2013-05-15 17:35:27] Beginning TopHat run (v2.0.8b)
-----------------------------------------------
[2013-05-15 17:35:27] Checking for Bowtie
Bowtie version: 2.1.0.0
[2013-05-15 17:35:27] Checking for Samtools
Samtools version: 0.1.19.0
[2013-05-15 17:35:27] Checking for Bowtie index files
[2013-05-15 17:35:27] Checking for reference FASTA file
[2013-05-15 17:35:27] Generating SAM header for test_ref
format: fastq
quality scale: phred33 (default)
[2013-05-15 17:35:27] Preparing reads
[FAILED]
[Errno 8] Exec format error
I tried to figure out the origin of the error but I am stuck.
I will appreciate if I can get some help.
Thanks
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