SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Tues 10/29 - Integrated Genome Browser on-line training - Introducing IGB 8.0 aloraine Events / Conferences 0 10-26-2013 03:00 PM
Introduction to Integrated Genome Browser (IGB) rhynwa Bioinformatics 0 09-04-2013 05:34 AM
Implementation of IGV or IGB tool on web page. kumardeep Bioinformatics 1 06-25-2012 03:50 AM
IGV v2 performance much worse than IGV 1.5? pmiguel Bioinformatics 1 05-17-2012 07:05 PM
Importing Genome in IGB and Chip Seq data in IGV ayushraman Bioinformatics 1 09-24-2011 05:42 AM

Reply
 
Thread Tools
Old 01-09-2019, 02:34 AM   #1
akivab
Junior Member
 
Location: Israel

Join Date: Dec 2018
Posts: 3
Default IGV or IGB

Hi,

In the past I used to work with IGB, mainly for DNA-seq.
I started working in a new lab, and the genome browser they have been using is IGV. Much of the data viewed in the lab is of RNA-seq and ATAC-seq.

I was wondering if there is any preference to IGV or IGB?
I found IGB to be easier to use and visually nicer, so I rather continue using it, unless of course there is some advantage to IGV.

Thanks,
Akiva

P.S. i read somewhere that IGV is better for NGS data, is this true? and why?
akivab is offline   Reply With Quote
Old 01-09-2019, 04:03 AM   #2
colindaven
Senior Member
 
Location: Germany

Join Date: Oct 2008
Posts: 412
Default

I think JBrowse desktop is a lot faster, cleaner and nicer than those two.

I haven't used IGB for a while, but whatever works for you! IGV is just the most well known standalone genome browser in my eyes.
colindaven is offline   Reply With Quote
Reply

Tags
genome browser, igb, igv, ngs, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:41 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO