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Old 10-24-2011, 12:50 AM   #1
StephaniePi83
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Location: France

Join Date: Sep 2011
Posts: 52
Default problem with bowtie input file

Hi,
I'm beginner in bioinformatic and i have some problem with bowtie input file format.
I have .bed files and i would like to eliminate the reads that match tRNA, rRNA, snoRNA and snRNA sequences that i store in a .fasta file.
If i well understand, bowtie take .fastq file as input : how can i convert .bed file in .fastq file ?
Thank you very much for your replies, it will be very helpful,
Stéphanie
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