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Old 05-13-2015, 09:54 AM   #1
Location: US

Join Date: Apr 2010
Posts: 63
Default CNV annotation tool

Dear all,

I detected CNVs with CNVnator tool from seq-data and after I identified the CNV regions with CNVruler. Now I need to annotate these regions.

Which tool I can use for it? I know that I can use bedtools or R (overlap), but is there any tool that I can use?

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Old 07-09-2018, 11:20 PM   #2
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Location: France

Join Date: Jun 2014
Posts: 5
Default AnnotSV: An integrated tool for Structural Variations (SV) annotation

I suggest using AnnotSV for SV/CNV annotation (with OMIM, DGV, 1000g, haploinsufficiency, TAD, ... and also with your own in-house information).

You can look at the following post describing the annotSV tool:
lgmSeq is offline   Reply With Quote

cnv; annotation; cnvr

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