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Old 02-10-2014, 02:04 AM   #1
Location: italy

Join Date: Apr 2012
Posts: 45
Default set allowed when aligning with BWA

Hi everyone,
i've been using BWA-mem for RnaSeq and i'd like to use this tool in order to find genes in public metagenomic datasets that are homolog to my gene pool.

There's a way to increase the number of errors allowed?

Should i look for another software? what one?

Thanks for your help!
Gorbenzer is offline   Reply With Quote
Old 02-10-2014, 02:51 AM   #2
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Location: uk

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Posts: 667

Try Blast or BLAT.
mastal is offline   Reply With Quote
Old 04-27-2014, 10:21 PM   #3
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Join Date: Jul 2013
Posts: 142

did any one get answer?
which stage blat should be used? .bam files or after annovar for mutations in exome seq?
thank you
jp. is offline   Reply With Quote

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