All-new SAMMate 2.5 is released.
New features:
RAEM-Read Assignment via EM (Deng et al. 2011, Nucleic Acids Research, doi: 10.1093/nar/gkr042)
One-step iQuant (isoform Quantification, manuscript in preparation)
Iterative iQuant (isoform Quantification, manuscript in preparation)
Output read counts for detecting differentially expressed genes and differentially expressed transcripts. e.g. using edgeR
New features:
RAEM-Read Assignment via EM (Deng et al. 2011, Nucleic Acids Research, doi: 10.1093/nar/gkr042)
One-step iQuant (isoform Quantification, manuscript in preparation)
Iterative iQuant (isoform Quantification, manuscript in preparation)
Output read counts for detecting differentially expressed genes and differentially expressed transcripts. e.g. using edgeR