Hello All,
How are some of you visualizing the Cuffdiff output files?
Is it just a matter of parsing (via a script) the FPKM and p-values out of the file and visualizing them in something akin to R?
Is anyone ranking there outputs according to p-values or is everyone just going with the log of FPKM values?
Any guidance or suggestions would be most appreciated.
Cheers,
Johnathon
How are some of you visualizing the Cuffdiff output files?
Is it just a matter of parsing (via a script) the FPKM and p-values out of the file and visualizing them in something akin to R?
Is anyone ranking there outputs according to p-values or is everyone just going with the log of FPKM values?
Any guidance or suggestions would be most appreciated.
Cheers,
Johnathon
Comment