Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How to convert pfam output format?

    Dear all,
    Recently, I aligned my transcriptome sequences to the pfam database. Sometimes, one sequence will hit several pfam records. And I want to convert the pfam output format from

    TRINITY_GG_428_c0_g1_i1_orf1 PF13499.1 EF_hand_5
    TRINITY_GG_428_c0_g1_i1_orf1 PF00036.27 efhand
    TRINITY_GG_428_c0_g1_i1_orf1 PF13405.1 EF_hand_4
    TRINITY_GG_428_c0_g1_i1_orf1 PF13833.1 EF_hand_6
    TRINITY_GG_428_c0_g1_i1_orf1 PF13202.1 EF_hand_3

    TRINITY_GG_429_c0_g1_i1_orf1 PF00156.22 Pribosyltran
    TRINITY_GG_431_c5_g1_i1_orf1 PF00475.13 IGPD
    TRINITY_GG_461_c0_g1_i1_orf1 PF01208.12 URO-D
    TRINITY_GG_461_c0_g1_i1_orf1 PF12876.2 Cellulase-like


    to

    TRINITY_GG_428_c0_g1_i1_orf1 PF13499.1 EF_hand_5 | PF00036.27 efhand | PF13405.1 EF_hand_4 | PF13833.1 EF_hand_6 | PF13202.1 EF_hand_3
    TRINITY_GG_429_c0_g1_i1_orf1 PF00156.22 Pribosyltran
    TRINITY_GG_431_c5_g1_i1_orf1 PF00475.13 IGPD
    TRINITY_GG_461_c0_g1_i1_orf1 PF01208.12 URO-D | PF12876.2 Cellulase-like
    .
    Could you please share your code or any idea with me to solve this problem?
    Thank you very much!

Latest Articles

Collapse

  • seqadmin
    Recent Advances in Sequencing Analysis Tools
    by seqadmin


    The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
    Today, 07:48 AM
  • seqadmin
    Essential Discoveries and Tools in Epitranscriptomics
    by seqadmin




    The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
    04-22-2024, 07:01 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 07:17 AM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-02-2024, 08:06 AM
0 responses
19 views
0 likes
Last Post seqadmin  
Started by seqadmin, 04-30-2024, 12:17 PM
0 responses
20 views
0 likes
Last Post seqadmin  
Started by seqadmin, 04-29-2024, 10:49 AM
0 responses
28 views
0 likes
Last Post seqadmin  
Working...
X