SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
GEOquery error message akolman Bioinformatics 8 06-06-2011 08:26 AM

Reply
 
Thread Tools
Old 10-24-2016, 05:35 PM   #1
ccdm
Junior Member
 
Location: usa

Join Date: Oct 2016
Posts: 1
Default GEOquery

Hi,

I'm trying to download the soft files for all the samples (GSMs) in a platform using the GEOquery package.

This is the script I'm using

gpl10558 <- getGEO('gpl10558')
Meta(gpl10558)$title

gsmids <- Meta(gpl10558)$sample_id
gsmlist <- sapply(gsmids,getGEO)
data <- names(gsmlist)


It starts ok and I get the soft file for a few hundred samples but then I get the following error:

Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
invalid 'nlines' argument


Does anyone has an idea why this is happening?

Thank you
ccdm is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:51 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO