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Old 04-18-2013, 12:41 PM   #1
casim
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Default CASIM: Assembly Using Synteny information

Is there a program that allows you to use the genome sequences of closely related species to inform the assembly a the genome of a new species, while allowing for a potentially significant loss of synteny

e.g. between two closely related species of bacteria that could have undergone significant rearrangement and gene loss/gain?
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Old 09-22-2015, 11:39 PM   #2
ithersam
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you'll get binding and a PCR product for one allele, but won't get a PCR product for the alternate allele. In practice, non-specific amplification can sometimes make the results difficult to interpret.
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