Dear all,
I am using qualimap in a NGS pipeline for QC and I want to run qualimap inside my perl code.
qualimap bamqc -bam read.bam -gff transcripts.human.64.bed.txt -outdirout_read -outformat PDF
Iam getting below error.
Error: Could not find or load main class org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain
Command works whne i run in command prompt
./qualimap bamqc -bam read.bam -gff transcripts.human.64.bed.txt -outdirout_read -outformat PDF
I also read FAQ and set export DISPLAY=:0 and unset DISPLAY. But still i am getting same error.
Any help will be highly useful to me.
Thanks
Regards
Manoj
I am using qualimap in a NGS pipeline for QC and I want to run qualimap inside my perl code.
qualimap bamqc -bam read.bam -gff transcripts.human.64.bed.txt -outdirout_read -outformat PDF
Iam getting below error.
Error: Could not find or load main class org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain
Command works whne i run in command prompt
./qualimap bamqc -bam read.bam -gff transcripts.human.64.bed.txt -outdirout_read -outformat PDF
I also read FAQ and set export DISPLAY=:0 and unset DISPLAY. But still i am getting same error.
Any help will be highly useful to me.
Thanks
Regards
Manoj