Hi all-
I have a question about MAQ software. At the website, http://maq.sourceforge.net/maq-man.shtml, one of the key commands listed was maq MATCH -param, etc. However in their manual documentation: http://maq.sourceforge.net/maq-manpage.shtml, the command is "map MAP -param etc". Does anyone know whether these two are same?
When I tested on a sample data, I found some alignment results were different because it reported on different strand. Apparently, both matches/alignments were valid. My question is how/whether I can retain both results, as in the .map file, it showed either or but not both?
Any attention is appreciated.
Thanks.
I have a question about MAQ software. At the website, http://maq.sourceforge.net/maq-man.shtml, one of the key commands listed was maq MATCH -param, etc. However in their manual documentation: http://maq.sourceforge.net/maq-manpage.shtml, the command is "map MAP -param etc". Does anyone know whether these two are same?
When I tested on a sample data, I found some alignment results were different because it reported on different strand. Apparently, both matches/alignments were valid. My question is how/whether I can retain both results, as in the .map file, it showed either or but not both?
Any attention is appreciated.
Thanks.