Hi all,
Illumina reads from 12 different genotypes were aligned with reference genome and call SNPs. I combined all reads together before alignment. After variant calling by samtools mpileup, how can I split 12 individuals in .pileup file or .vcf file?
I wonder if anyone could help me.
Illumina reads from 12 different genotypes were aligned with reference genome and call SNPs. I combined all reads together before alignment. After variant calling by samtools mpileup, how can I split 12 individuals in .pileup file or .vcf file?
I wonder if anyone could help me.
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