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Old 06-07-2011, 12:46 PM   #1
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Location: MA

Join Date: Oct 2010
Posts: 160
Default Bowtie --un output

Hi all,

When I take the unmapped reads output from bowtie (in fastq) and I try to load this file into FastQC; it starts right but after a while it says: "Failed to process file: ID line didn't star with @". When I visualize the file it's a good fastq format... Have any of you experience this before??

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